User-friendly computational Tools
Life scientists now have access to an unprecedented amount of experimental data. A single laboratory can measure the levels of all transcripts, proteins, or metabolites of an organism under different perturbations or can sequence the entire genome of hundreds of individuals or specimens. Systems biology aims to study the behavior and interaction of these molecules, using advanced mathematical models. Modern data-intensive genetics is also often dependent on statistical tools for identifying signals through population-level measurements. However, according to Sydney Brenner “we are drowning in a sea of data and starving for knowledge. Today, biology is more about gathering data than hunting down new ideas.” This is partly due to the fact that a substantial number of researchers who are capable of thinking about new insights, are not able to deal with the vast amounts of data generated by modern technologies. A fundamental characteristic for a tool to be adopted widely by life scientists is that it should be user-friendly. Our laboratory has developed several user-friendly tools and databases for those that have no bioinformatics background.
Lista de serviços
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StructRNAfinder: an automated pipeline and web server for RNA families prediction.StructRNAfinder: an automated pipeline and web server for RNA families prediction.
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CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses.CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses.
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webCEMiTool: Co-expression Modular Analysis Made Easy.webCEMiTool: Co-expression Modular Analysis Made Easy.
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Assessing the Impact of Sample Heterogeneity on Transcriptome Analysis of Human Diseases Using MDP Webtool.Assessing the Impact of Sample Heterogeneity on Transcriptome Analysis of Human Diseases Using MDP Webtool.
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Predicting RNA Families in Nucleotide Sequences Using StructRNAfinder.Predicting RNA Families in Nucleotide Sequences Using StructRNAfinder.
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OUTBREAK: a user-friendly georeferencing online tool for disease surveillance.OUTBREAK: a user-friendly georeferencing online tool for disease surveillance.
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Noninvasive prenatal paternity determination using microhaplotypes: a pilot study.Noninvasive prenatal paternity determination using microhaplotypes: a pilot study.
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Editorial: User-Friendly Tools Applied to Genetics or Systems Biology.Editorial: User-Friendly Tools Applied to Genetics or Systems Biology.
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Automatic detection of the parasite Trypanosoma cruzi in blood smears using a machine learning approach applied to mobile phone imagesAutomatic detection of the parasite Trypanosoma cruzi in blood smears using a machine learning approach applied to mobile phone images
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Tucuxi-BLAST: Enabling fast and accurate record linkage of large-scale health-related administrative databases through a DNA-encoded approachTucuxi-BLAST: Enabling fast and accurate record linkage of large-scale health-related administrative databases through a DNA-encoded approach
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Ten quick tips for harnessing the power of ChatGPT in computational biologyTen quick tips for harnessing the power of ChatGPT in computational biology